1- Andersen, D. C. and L. Krummen. 2002. Recombinant protein expression for therapeutic applications. Current opinion in biotechnology 13: 117-123.
2- Attwood, T. K., A. Gisel, N.-E. Eriksson and E. Bongcam-Rudloff. 2011. Concepts, historical milestones and the central place of bioinformatics in modern biology: a European perspective. Bioinformatics-trends and methodologies 1.
3- Brenner, F., R. Villar, F. Angulo, R. Tauxe and B. Swaminathan. 2000. Salmonella nomenclature. Journal of clinical microbiology 38: 2465-2467.
4- de Freitas, C. G., Â. P. Santana, P. H. C. da Silva, V. S. P. Gonçalves, M. d. A. F. Barros, F. A. G. Torres, L. S. Murata and S. Perecmanis. 2010. PCR multiplex for detection of Salmonella Enteritidis, Typhi and Typhimurium and occurrence in poultry meat. 139: 15-22.
5- Delany, I., R. Rappuoli and K. L. Seib. 2013. Vaccines, reverse vaccinology, and bacterial pathogenesis. Cold Spring Harbor perspectives in medicine 3: a012476.
6- Eng, S.-K., P. Pusparajah, N.-S. Ab Mutalib, H.-L. Ser, K.-G. Chan and L.-H. Lee. 2015. Salmonella: a review on pathogenesis, epidemiology and antibiotic resistance. Frontiers in Life Science 8: 284-293.
7- Esposito, C., D. Marasco, G. Delogu, E. Pedone and R. Berisio. 2011. Heparin-binding hemagglutinin HBHA from Mycobacterium tuberculosis affects actin polymerisation. Biochemical and biophysical research communications 410: 339-344.
8- Forouharmehr, A. 2021. Engineering an efficient poly-epitope vaccine against Toxoplasma gondii infection: a computational vaccinology study. Microbial Pathogenesis 152: 104646.
9- Forouharmehr, A., N. Nazifi, S. M. Mousavi and A. Jaydari. 2022. Designing an efficient epitope-based vaccine conjugated with a molecular adjuvant against Bovine Babesiosis: A computational study. Process Biochemistry 121: 170-177.
10- Freeman Jr, T. C., S. J. Landry and W. C. Wimley. 2011. The prediction and characterization of YshA, an unknown outer-membrane protein from Salmonella typhimurium. Biochimica et Biophysica Acta (BBA)-Biomembranes 1808: 287-297.
11- Fulop, M., R. Manchee and R. Titball. 1995. Role of lipopolysaccharide and a major outer membrane protein from Francisella tularensis in the induction of immunity against tularemia. Vaccine 13: 1220-1225.
12- Gamage, D. G., A. Gunaratne, G. R. Periyannan and T. G. Russell. 2019. Applicability of instability index for in vitro protein stability prediction. Protein and peptide letters 26: 339-347.
13- Gheibihayat, S. M., A, Sadeghinia. sh, Nazarian. Z, Adeli. 2015. Mechanisms and Performances of Adjuvants in Vaccine Immunogenicity. Journal of Applied Biotechnology Reports. 2 (3) 257-264.
14- Guruprasad, K., B. B. Reddy and M. W. Pandit. 1990. Correlation between stability of a protein and its dipeptide composition: a novel approach for predicting in vivo stability of a protein from its primary sequence. Protein Engineering, Design and Selection 4: 155-161.
15-Jamshidi, A. E., M. Basami and N. S. Afshari. 2009. Identification of Salmonella spp. and Salmonella typhimurium by a multiplex PCR-based assay from poultry carcasses in Mashhad-Iran. International Journal of Veterinary Research. 3 (1) 43-48.
16- Jaydari, A., A. Forouharmehr and N. Nazifi. 2019. Determination of immunodominant scaffolds of Com1 and OmpH antigens of Coxiella burnetii. Microbial pathogenesis 126: 298-309.
17- Jaydari, A., N. Nazifi and A. Forouharmehr. 2020. Computational design of a novel multi-epitope vaccine against Coxiella burnetii. Human Immunology 81: 596-605.
18- Kanzler, H., F. J. Barrat, E. M. Hessel and R. L. Coffman. 2007. Therapeutic targeting of innate immunity with Toll-like receptor agonists and antagonists. Nature medicine 13: 552-559.
19- Kardani, K., A. Bolhassani and A. Namvar. 2020. An overview of in silico vaccine design against different pathogens and cancer. Expert Review of Vaccines 19: 699-726.
20- Kisiela, D. I., S. Chattopadhyay, S. J. Libby, J. E. Karlinsey, F. C. Fang, V. Tchesnokova, J. J. Kramer, V. Beskhlebnaya, M. Samadpour and K. Grzymajlo. 2012. Evolution of Salmonella enterica virulence via point mutations in the fimbrial adhesin. PLoS pathogens 8: e1002733.
21- Kundrotas, P. J., Z. Zhu and I. A. Vakser. 2010. GWIDD: genome-wide protein docking database. 38: D513-D517.
22- Mitov, I., V. Denchev and K. Linde. 1992. Humoral and cell-mediated immunity in mice after immunization with live oral vaccines of Salmonella typhimurium: auxotrophic mutants with two attenuating markers. Vaccine 10: 61-66.
23- Mukkur, T., G. McDowell, B. Stocker and A. Lascelles. 1987. Protection against experimental salmonellosis in mice and sheep by immunisation with aromatic-dependent Salmonella typhimurium. Journal of medical microbiology 24: 11-19.
24- Ngan, G. J. Y., L. M. Ng, R. T. Lin and J. W. Teo. 2010. Development of a novel multiplex PCR for the detection and differentiation of Salmonella enterica serovars Typhi and Paratyphi A. Research in Microbiology 161: 243-248.
25- Parra, M., T. Pickett, G. Delogu, V. Dheenadhayalan, A.-S. Debrie, C. Locht and M. J. Brennan. 2004. The mycobacterial heparin-binding hemagglutinin is a protective antigen in the mouse aerosol challenge model of tuberculosis. Infection and Immunity 72: 6799-6805.
26- Porwollik, S., E. Boyd, C. Choy, P. Cheng, L. Florea, E. Proctor and M. McClelland. 2004. Characterization of Salmonella enterica subspecies I genovars by use of microarrays. Journal of bacteriology 186: 5883-5898.
27- Rashidian, E., A. Forouharmehr, N. Nazifi, A. Jaydari and N. Shams. 2021. Computer-aided design of a novel poly-epitope protein in fusion with an adjuvant as a vaccine candidate against leptospirosis. Current Proteomics 18: 113-123.
28- Rashidian, E., Z. S. Gandabeh, A. Forouharmehr, N. Nazifi, N. Shams and A. Jaydari. 2020. Immunoinformatics approach to engineer a potent poly-epitope fusion protein vaccine against Coxiella burnetii. International Journal of Peptide Research and Therapeutics 26: 2191-2201.
29- Shams, N. and A. Forouharmehr. 2021. Assembling the Most Antigenic Peptides of COVID-19 Immunogenic Proteins Along with a Molecular Adjuvant to Develop a Novel Polyepitope Vaccine: a Bioinformatics Investigation. Vaccine Research 8: 36-46.
30- Shams, N., Z. Shakarami Gandabeh, N. Nazifi, A. Forouharmehr, A. Jaydari and E. Rashidian. 2020. Computational design of different epitope-based vaccines against Salmonella typhi. International Journal of Peptide Research and Therapeutics 26: 1527-1539.
31- Singh, Y., A. Saxena, R. Kumar, P. Bhatt and M. Saxena. 2017. Immunogenic Outer membrane Proteins (Omps) of Salmonella: Potential Candidate for sub-unit vaccine. Virology & Immunology 1: 1-6.
32- Tahamtan, A., J. Charostad, S. J. H. Shokouh and M. Barati. 2017. An overview of history, evolution, and manufacturing of various generations of vaccines. Journal of Archives in Military Medicine 5(3):e12315.
33- Tritto, E., F. Mosca and E. De Gregorio. 2009. Mechanism of action of licensed vaccine adjuvants. Vaccine 27: 3331-3334.
34- Verma, S. K., V. Gautam, K. Balakrishna and S. Kumar. 2009. Overexpression, purification, and immunogenicity of recombinant porin proteins of Salmonella enterica Serovar Typhi (S. Typhi). Journal of microbiology and biotechnology 19: 1034-1040.
35- Werle, M. and A. Bernkop-Schnürch. 2006. Strategies to improve plasma half life time of peptide and protein drugs. Amino acids 30: 351-367.
36- Azizpour A. 2018. A Survey on Prevalence of Salmonella enteritidis and Salmonella typhimurium Serotypes in Broiler Flocks of Ardabil Province and Determination of Their Antibiotics Resistance to Five Antibacterial Agents Widely Used in the Iranian Medical Field .J health 9 (2) :143-151.
37- Shapouri, R., M, Rahnama. Sh, Iqbalzadeh. 2018. Investigating the prevalence of Salmonella serotypes in chicken meat and eggs and determining their antibiotic sensitivity in Zanjan city. Physiology and animal development (biological sciences). 2018; 2(3) 63-71
)