داکینگ مولکولی پپتید باکتریوسین انتروسین P با آنتی‌ژن سطحی باکتری اشرشیاکلای مولد ورم پستان در گاوشیری

1- Abbaszadegan, A., A. Gholami, Y. Ghahramani, R. Ghareghan, M. Ghareghan, A. Kazemi, A. Iraji and Y. Ghasemi. 2016. Antimicrobial and cytotoxic activity of Cuminum cyminum as an intracanal medicament compared to chlorhexidine gel. Iranian Endodontic Journal 11: 44.
2- Aghamohammadi, M., D. Haine, D. F. Kelton, H. W. Barkema, H. Hogeveen, G. P. Keefe and S. Dufour. 2018. Herd-level mastitis-associated costs on Canadian dairy farms. Frontiers in Veterinary Science 5: 100.
3- Anfinsen, C. B. 1973. Principles that govern the folding of protein chains. Science 181: 223-230.
4- Beg, M., S. C. Thakur and L. S. Meena. 2018. Structural prediction and mutational analysis of Rv3906c gene of Mycobacterium tuberculosis H37Rv to determine its essentiality in survival. Advances in Bioinformatics 2018.
5- Berman, H. M., J. Westbrook, Z. Feng, G. Gilliland, T. N. Bhat, H. Weissig, I. N. Shindyalov and P. E. Bourne. 2000. The protein data bank. Nucleic Acids Research 28: 235-242.
6- Bowie, J. U., R. Luthy and D. Eisenberg. 1991. A method to identify protein sequences that fold into a known three-dimensional structure. Science 253: 164-170.
7- Burvenich, C., V. Van Merris, J. Mehrzad, A. Diez-Fraile and L. Duchateau. 2003. Severity of E. coli mastitis is mainly determined by cow factors. Veterinary research 34: 521-564.
8- Carugo, O. and S. Pongor. 2001. A normalized root‐mean‐spuare distance for comparing protein three‐dimensional structures. Protein Science 10: 1470-1473.
9- Chan, D. I., E. J. Prenner and H. J. Vogel. 2006. Tryptophan-and arginine-rich antimicrobial peptides: structures and mechanisms of action. Biochimica et Biophysica Acta (BBA)-Biomembranes 1758: 1184-1202.
10- Consortium, U. 2015. UniProt: a hub for protein information. Nucleic Acids Res 43: D204-D212.
11- D'Este, F., M. Benincasa, G. Cannone, M. Furlan, M. Scarsini, D. Volpatti, R. Gennaro, A. Tossi, B. Skerlavaj and M. Scocchi. 2016. Antimicrobial and host cell-directed activities of Gly/Ser-rich peptides from salmonid cathelicidins. Fish & Shellfish Immunology 59: 456-468.
12- Deng, H., Y. Jia and Y. Zhang. 2018. Protein structure prediction. International Journal of Modern Physics B 32: 1840009.
13- Güler, L., Ü. Ok, K. Gündüz, Y. Gülcü and H. Hadimli. 2005. Antimicrobial susceptibility and coagulase gene typing of Staphylococcus aureus isolated from bovine clinical mastitis cases in Turkey. Journal of Dairy Science 88: 3149-3154.
14- Huan, Y., Q. Kong, H. Mou and H. Yi. 2020. Antimicrobial peptides: classification, design, application and research progress in multiple fields. Frontiers in Microbiology 11: 2559.
15- Javadmanesh, A., E. Mohammadi, Z. Mousavi, M. Azghandi and A. Tanhaiean. 2021. Antibacterial effects assessment on some livestock pathogens, thermal stability and proposing a probable reason for different levels of activity of thanatin. Scientific Reports 11: 1-10.
16- Karplus, M. and J. A. McCammon. 2002. Molecular dynamics simulations of biomolecules. Nature structural biology 9: 646-652.
17- Kwon, Y., H. Kim, Y. Kim, Y. Kang, I. Lee, B. Jin, Y. Han, H. Cheon, N. Ha and S. Seo. 2008. Comparative analysis of two attacin genes from Hyphantria cunea. Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology 151: 213-220.
18- Le, T. N., T. H. Do, T. N. Nguyen, N. T. Tran, S. O. Enfors and H. Truong. 2014. Expression and simple purification strategy for the generation of anti-microbial active Enterocin P from Enterococcus faecium expressed in Escherichia coli ER2566. Iranian Journal of Biotechnology 12: 17-25.
19- Lee, J. H., K. S. Cho, J. Lee, J. Yoo, J. Lee and J. Chung. 2001. Diptericin-like protein: an immune response gene regulated by the anti-bacterial gene induction pathway in Drosophila. Gene 271: 233-238.
20- Lointier, M., C. Aisenbrey, A. Marquette, J. H. Tan, A. Kichler and B. Bechinger. 2020. Membrane pore-formation correlates with the hydrophilic angle of histidine-rich amphipathic peptides with multiple biological activities. Biochimica et Biophysica Acta (BBA)-Biomembranes 1862: 183212.
21- Maupetit, J., P. Derreumaux and P. Tufféry. 2010. A fast method for large‐scale De Novo peptide and miniprotein structure prediction. Journal of computational chemistry 31: 726-738.
22- Mohammadi, E. and A. Javadmanesh. 2019. Investigation of thermal-vulnerability of thanatin: an in silico study.  The 3rd International Congress on Biomedicine.
23- Moura, E. C., T. Baeta, A. Romanelli, C. Laguri, A. M. Martorana, E. Erba, J.-P. Simorre, P. Sperandeo and A. Polissi. 2020. Thanatin impairs lipopolysaccharide transport complex assembly by targeting LptC–LptA interaction and decreasing LptA stability. Frontiers in Microbiology 11: 909.
24- Mousavi, S., S. Kazemi, M. Mahroughi and A. Tanhaeian. 2021. Evaluation of antibacterial activity and toxicity of enterocin P peptide and two essential oils against animal pathogens. Veterinary Researches and Biological Products 34: 48-54.
25- Mousavi, S., and A. Javadmanesh. 2022. Molecular docking of Enterocin-P peptide with DNA: an in silico study. Proceedings of the First International Conference and the 10th National Bioinformatics Conference of Iran. Abstract 313.
26- Mousavi, S., M. Tahmoorespoor, M. Sekhavati and A. Javadmanesh. 2018. Evaluation of antibacterial properties of camel lactoferrampin-lactoferricin recombinant peptide on the growth rate of Staphylococcus aureus bacteria causes of mastitis in Holstein dairy cows. Journal of Veterinary Microbiology 37: 37-47.
27- Mousavi, S., Tanhaeian, A., and A. Javadmanesh. 2022. Evaluation of in vitro antifungal properties of Thanatin peptide and Chinaberry extract on fungal pathogen of bovine mastitis. Veterinary Researches and Biological Products 134: 215-221.
28- Nemaysh, V. and P. M. Luthra. 2017. Computational analysis revealing that K634 and T681 mutations modulate the 3D-structure of PDGFR-β and lead to sunitinib resistance. RSC Advances 7: 37612-37626.
29- Pagadala, N. S., K. Syed and J. Tuszynski. 2017. Software for molecular docking: a review. Biophysical Reviews 9: 91-102.
30- Roshanak, S., F. Shahidi, F. T. Yazdi, A. Javadmanesh and J. Movaffagh. 2020. Evaluation of antimicrobial activity of Buforin I and Nisin and the synergistic effect of their combination as a novel antimicrobial preservative. Journal of Food Protection 83: 2018-2025.
31- Roshanak, S., F. Shahidi, F. T. Yazdi, A. Javadmanesh and J. Movaffagh. 2021. Buforin I an alternative to conventional antibiotics: Evaluation of the antimicrobial properties, stability, and safety. Microbial Pathogenesis 161(Pt B): 105301.
32- Shahidi, F., S. Roshanak, A. Javadmanesh, F. T. Yazdi, Z. Pirkhezranian and M. Azghandi. 2020. Evaluation of antimicrobial properties of bovine lactoferrin against foodborne pathogenic microorganisms in planktonic and biofilm forms (in vitro). Journal of Consumer Protection and Food Safety 15: 277-283.
33- Tanhaeian, A., M. Azghandi, Z. Mousavi and A. Javadmanesh. 2020. Expression of thanatin in HEK293 cells and investigation of its antibacterial effects on some human pathogens. Protein and Peptide Letters 27: 41-47.
34- Wang, J., S. Chou, L. Xu, X. Zhu, N. Dong, A. Shan and Z. Chen. 2015. High specific selectivity and membrane-active mechanism of the synthetic centrosymmetric α-helical peptides with Gly-Gly pairs. Scientific Reports 5: 1-19.
35- Yang, J., R. Yan, A. Roy, D. Xu, J. Poisson and Y. Zhang. 2015. The I-TASSER Suite: protein structure and function prediction. Nature Methods 12: 7-8.